PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0146s00050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 236aa    MW: 24764.9 Da    PI: 7.8453
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0146s00050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1272e-3927109283
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 
                        a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+   a++s+s ++
  Vradi0146s00050.1  27 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALaAAGNSVSPQG 109
                        789******************************************************************88853333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.2E-3232118IPR005333Transcription factor, TCP
PROSITE profilePS5136928.0163387IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGENKPGEMK DFQIVVSEKD ESKKQLAPKR SSNKDRHTKV EGRGRRIRMP ALCAARIFQL  60
TRELGHKSDG ETIQWLLQQA EPSIIAATGT GTIPASALAA AGNSVSPQGA SLSSGLHHKI  120
DELGGSNMGS GSSRTSWQMV GGNLGRPHVA TGLWPPHVSG FGFQTSSGPS NAALGTESSN  180
YLQKIAFPGF DLPAAATNMG HMSFTSILGA AVLESPDTGA SISGMELHDQ MDWLL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00636PBMTransfer from Glyma.19G095300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523867.11e-153PREDICTED: transcription factor TCP20
RefseqXP_014523868.11e-153PREDICTED: transcription factor TCP20
SwissprotQ9LSD55e-66TCP20_ARATH; Transcription factor TCP20
TrEMBLA0A0L9U6J01e-153A0A0L9U6J0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RVY51e-153A0A0S3RVY5_PHAAN; Uncharacterized protein
STRINGGLYMA19G26560.11e-124(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33393269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.13e-67TCP family protein